Description
Pretrained BertForSequenceClassification model, adapted from Hugging Face and curated to provide scalability and production-readiness using Spark NLP. BioBert-PubMed200kRCT is a English model originally trained by pritamdeka.
Predicted Entities
METHODS, BACKGROUND, RESULTS, OBJECTIVE, CONCLUSIONS
How to use
documentAssembler = DocumentAssembler() \
.setInputCol("text") \
.setOutputCol("document")
tokenizer = Tokenizer() \
.setInputCols("document") \
.setOutputCol("token")
sequenceClassifier_loaded = BertForSequenceClassification.pretrained("bert_classifier_bio_pubmed200krct","en") \
.setInputCols(["document", "token"]) \
.setOutputCol("class")
pipeline = Pipeline(stages=[documentAssembler, tokenizer,sequenceClassifier_loaded])
data = spark.createDataFrame([["PUT YOUR STRING HERE"]]).toDF("text")
result = pipeline.fit(data).transform(data)
val documentAssembler = new DocumentAssembler()
.setInputCol("text")
.setOutputCol("document")
val tokenizer = new Tokenizer()
.setInputCols(Array("document"))
.setOutputCol("token")
val sequenceClassifier_loaded = BertForSequenceClassification.pretrained("bert_classifier_bio_pubmed200krct","en")
.setInputCols(Array("document", "token"))
.setOutputCol("class")
val pipeline = new Pipeline().setStages(Array(documentAssembler, tokenizer,sequenceClassifier_loaded))
val data = Seq("PUT YOUR STRING HERE").toDF("text")
val result = pipeline.fit(data).transform(data)
import nlu
nlu.load("en.classify.bert.bio_pubmed.by_pritamdeka").predict("""PUT YOUR STRING HERE""")
Model Information
| Model Name: | bert_classifier_bio_pubmed200krct |
| Compatibility: | Spark NLP 4.1.0+ |
| License: | Open Source |
| Edition: | Official |
| Input Labels: | [document, token] |
| Output Labels: | [class] |
| Language: | en |
| Size: | 405.8 MB |
| Case sensitive: | true |
| Max sentence length: | 256 |
References
- https://huggingface.co/pritamdeka/BioBert-PubMed200kRCT
- https://github.com/Franck-Dernoncourt/pubmed-rct/tree/master/PubMed_200k_RCT