Description
Pretrained BertForTokenClassification model, adapted from Hugging Face and curated to provide scalability and production-readiness using Spark NLP.bioclinicalbert_full_finetuned_ner_pablo is a English model originally trained by pabRomero.
How to use
documentAssembler = DocumentAssembler() \
.setInputCol('text') \
.setOutputCol('document')
tokenizer = Tokenizer() \
.setInputCols(['document']) \
.setOutputCol('token')
tokenClassifier = BertForTokenClassification.pretrained("bioclinicalbert_full_finetuned_ner_pablo","en") \
.setInputCols(["documents","token"]) \
.setOutputCol("ner")
pipeline = Pipeline().setStages([documentAssembler, tokenizer, tokenClassifier])
data = spark.createDataFrame([["I love spark-nlp"]]).toDF("text")
pipelineModel = pipeline.fit(data)
pipelineDF = pipelineModel.transform(data)
val documentAssembler = new DocumentAssembler()
.setInputCols("text")
.setOutputCols("document")
val tokenizer = new Tokenizer()
.setInputCols("document")
.setOutputCol("token")
val tokenClassifier = BertForTokenClassification.pretrained("bioclinicalbert_full_finetuned_ner_pablo", "en")
.setInputCols(Array("documents","token"))
.setOutputCol("ner")
val pipeline = new Pipeline().setStages(Array(documentAssembler, tokenizer, tokenClassifier))
val data = Seq("I love spark-nlp").toDS.toDF("text")
val pipelineModel = pipeline.fit(data)
val pipelineDF = pipelineModel.transform(data)
Model Information
| Model Name: | bioclinicalbert_full_finetuned_ner_pablo |
| Compatibility: | Spark NLP 5.5.0+ |
| License: | Open Source |
| Edition: | Official |
| Input Labels: | [document, token] |
| Output Labels: | [ner] |
| Language: | en |
| Size: | 403.4 MB |
References
https://huggingface.co/pabRomero/BioClinicalBERT-full-finetuned-ner-pablo